PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S02420.20
Common NameJCGZ_19651, LOC105643842
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C3H
Protein Properties Length: 283aa    MW: 29945.4 Da    PI: 9.5118
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S02420.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.68.7e-08259282225
                    -S---SGGGGTS--TTTTT-SS-S CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                    +++ C++++++G+Ck G+ C + H
  Jcr4S02420.20 259 GQRVCKYYHENGHCKKGAACDYLH 282
                    6899*******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.45257283IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-5257282IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-5259282IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-5261282IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MSTQPSGYGN WGDTQTFVHN SASSFIAGNT GTMPSDLWRG PIPAQPNIQP SAASNVPWGM  60
SVTDNQTTTP RQGPENQNTG WGPIPGNSNM GWGGPVHANS NQGWVASGQA PPANANPGWV  120
AHGQGQAPGN ANPGWVAPVQ GQAAGNAFPA WMPPGQGPTP VNANQTWVAP GQGQPPGNAN  180
PNWAAASVNM GSWGSEQNQN GERFSSQRNT SQGGDSGYGG GKPWNKQSSF GRERDSPRPR  240
ERDSSRHKER ESSRPPFKGQ RVCKYYHENG HCKKGAACDY LHT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012084451.10.0PREDICTED: zinc finger CCCH domain-containing protein 19 isoform X1
TrEMBLA0A067JUK40.0A0A067JUK4_JATCU; Uncharacterized protein
STRINGPOPTR_0004s16880.12e-87(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14351523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16485.13e-15nucleic acid binding;zinc ion binding;DNA binding
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]